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1

Sequential pattern mining for discovering gene interactions and their contextual information from biomedical texts

Cellier, Peggy, Charnois, Thierry, Plantevit, Marc, Rigotti, Christophe, Crémilleux, Bruno, Gandrillon, Olivier, Kléma, Jiří, Manguin, Jean-Luc

Journal:

Journal of Biomedical Semantics

Year:

2015

Language:

english

File:

PDF, 766 KB

english, 2015

2

Global gene expression changes in human embryonic lung fibroblasts induced by organic extracts from respirable air particles

Helena Líbalová, Kateřina Uhlířová, Jiří Kléma, Miroslav Machala, Radim J Šrám, Miroslav Ciganek, Jan Topinka

Journal:

Particle and Fibre Toxicology

Year:

2012

Language:

english

File:

PDF, 515 KB

english, 2012

3

Capitalizing on Aggregate Data for Gaining Process Understanding––Effect of Raw Material, Environmental and Process Conditions on the Dissolution Rate of a Sustained Release Product

Karel Stryczek, Petr Horacek, Jiri Klema, Xavier Castells, Bob Stewart, Jean-Marie Geoffroy

Journal:

Journal of Pharmaceutical Innovation

Year:

2007

Language:

english

File:

PDF, 367 KB

english, 2007

4

Optimized model tuning in medical systems

Jiří Kléma, Jiří Kubalík, Lenka Lhotská

Journal:

Computer Methods and Programs in Biomedicine

Year:

2005

Language:

english

File:

PDF, 1.04 MB

english, 2005

5

Genotoxicity but not the AhR-mediated activity of PAHs is inhibited by other components of complex mixtures of ambient air pollutants

Líbalová, Helena, Krčková, Simona, Uhlířová, Kateřina, Milcová, Alena, Schmuczerová, Jana, Ciganek, Miroslav, Kléma, Jiri, Machala, Miroslav, Šrám, Radim J., Topinka, Jan

Journal:

Toxicology Letters

Year:

2014

Language:

english

File:

PDF, 683 KB

english, 2014

6

Genome-wide miRNA profiling in myelodysplastic syndrome with del(5q) treated with lenalidomide

Merkerova, Michaela Dostalova, Krejcik, Zdenek, Belickova, Monika, Hrustincova, Andrea, Klema, Jiri, Stara, Eliška, Zemanova, Zuzana, Michalova, Kyra, Cermak, Jaroslav, Jonasova, Anna

Journal:

European Journal of Haematology

Year:

2015

Language:

english

File:

PDF, 329 KB

english, 2015

7

Analysis of gene expression changes in A549 cells induced by organic compounds from respirable air particles

Líbalová, Helena, Krčková, Simona, Uhlířová, Kateřina, Kléma, Jiří, Ciganek, Miroslav, Rössner, Pavel, Šrám, Radim J., Vondráček, Jan, Machala, Miroslav, Topinka, Jan

Journal:

Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis

Year:

2014

Language:

english

File:

PDF, 1.12 MB

english, 2014

8

[IEEE 2014 IEEE 27th International Symposium on Computer-Based Medical Systems (CBMS) - New York, NY, USA (2014.5.27-2014.5.29)] 2014 IEEE 27th International Symposium on Computer-Based Medical Systems - miXGENE Tool for Learning from Heterogeneous Gene Expression Data Using Prior Knowledge

Holec, Matej, Gologuzov, Valentin, Klema, Jiri

Year:

2014

Language:

english

File:

PDF, 145 KB

english, 2014

9

Aberrant expression of the microRNA cluster in 14q32 is associated with del(5q) myelodysplastic syndrome and lenalidomide treatment

Krejčík, Zdeněk, Beličková, Monika, Hruštincová, Andrea, Kléma, Jiří, Zemanová, Zuzana, Michalová, Kyra, Čermák, Jaroslav, Jonášová, Anna, Dostálová Merkerová, Michaela

Journal:

Cancer Genetics

Year:

2015

Language:

english

File:

PDF, 809 KB

english, 2015

10

Molecular Networks Involved in the Immune Control of BK Polyomavirus

Girmanova, Eva, Brabcova, Irena, Klema, Jiri, Hribova, Petra, Wohlfartova, Mariana, Skibova, Jelena, Viklicky, Ondrej

Journal:

Clinical & Developmental Immunology

Year:

2012

Language:

english

File:

PDF, 153 KB

english, 2012

11

Network-constrained forest for regularized classification of omics data

Anděl, Michael, Kléma, Jiří, Krejčík, Zdeněk

Journal:

Year:

2015

Language:

english

File:

PDF, 579 KB

english, 2015

12

[IEEE 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Washington, DC, USA (2015.11.9-2015.11.12)] 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Sparse omics-network regularization to increase interpretability and performance of linear classification models

Andel, Michael, Masri, Filip, Klema, Jiri, Krejcik, Zdenek, Belickova, Monika

Year:

2015

Language:

english

File:

PDF, 1.12 MB

english, 2015

13

[IEEE 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Belfast, United Kingdom (2014.11.2-2014.11.5)] 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Network-constrained forest for regularized omics data classification

Andel, Michael, Klema, Jiri, Krejcik, Zdenek

Year:

2014

Language:

english

File:

PDF, 211 KB

english, 2014

14

Combining sequence and itemset mining to discover named entities in biomedical texts: a new type of pattern

Plantevit, Marc, Charnois, Thierry, Klema, Jiri, Rigotti, Christophe, Cremilleux, Bruno

Journal:

International Journal of Data Mining Modelling and Management

Year:

2009

Language:

english

File:

PDF, 1.34 MB

english, 2009

15

Up-regulation of ribosomal genes is associated with a poor response to azacitidine in myelodysplasia and related neoplasms

Monika Belickova, M., Merkerova, Michaela Dostalova, Votavova, Hana, Valka, Jan, Vesela, Jitka, Pejsova, Barbora, Hajkova, Hana, Klema, Jiri, Cermak, Jaroslav, Jonasova, Anna

Journal:

International Journal of Hematology

Year:

2016

Language:

english

File:

PDF, 684 KB

english, 2016

16

Global changes in expression and functional profile of lung adenocarcinoma cells exposed to various toxic AhR ligands

Prochazkova, Jirina, Hyzdalova, Martina, Strapacova, Simona, Svrzkova, Lucie, Hruba, Eva, Masek, Josef, Libalova, Helena, Klema, Jiri, Topinka, Jan, Vondracek, Jan, Machala, Miroslav

Journal:

Toxicology Letters

Year:

2017

Language:

english

File:

PDF, 58 KB

english, 2017

17

Mechanisms of toxicity of particulate engine emissions from diesel and alternative fuels under realistic traffic conditions

Topinka, Jan, Vojtisek-Lom, Michal, Klema, Jiri, Machala, Miroslav, Libalova, Helena

Journal:

Toxicology Letters

Year:

2017

Language:

english

File:

PDF, 98 KB

english, 2017

18

Expression of immune-related molecules in THP-1 macrophage-like cells exposed to nanoparticles

Brzicova, Tana, Javorkova, Eliska, Vrbova, Kristyna, Zajicova, Alena, Holan, Vladimir, Sikorova, Jitka, Klema, Jiri, Topinka, Jan, Rossner, Pavel

Journal:

Toxicology Letters

Year:

2017

Language:

english

File:

PDF, 62 KB

english, 2017

19

Transcriptional response to organic compounds from diverse gasoline and biogasoline fuel emissions in human lung cells

Libalova, Helena, Rossner, Pavel, Vrbova, Kristyna, Brzicova, Tana, Sikorova, Jitka, Vojtisek-Lom, Michal, Beranek, Vit, Klema, Jiri, Ciganek, Miroslav, Neca, Jiri, Machala, Miroslav, Topinka, Jan

Journal:

Toxicology in Vitro

Year:

2018

Language:

english

File:

PDF, 676 KB

english, 2018

20

Gene expression profiling in healthy newborns from diverse localities of the Czech Republic

Honkova, Katerina, Rossnerova, Andrea, Pavlikova, Jitka, Svecova, Vlasta, Klema, Jiri, Topinka, Jan, Milcova, Alena, Libalova, Helena, Choi, Hyunok, Veleminsky, Milos, Sram, Radim J., Rossner, Pavel

Journal:

Environmental and Molecular Mutagenesis

Year:

2018

Language:

english

File:

PDF, 807 KB

english, 2018

21

Adaptive changes in global gene expression profile of lung carcinoma A549 cells acutely exposed to distinct types of AhR ligands

Procházková, Jiřina, Strapáčová, Simona, Svržková, Lucie, Andrysík, Zdeněk, Hýžďalová, Martina, Hrubá, Eva, Pěnčíková, Kateřina, Líbalová, Helena, Topinka, Jan, Kléma, Jiří, Espinosa, Joaquín M., Vond

Journal:

Toxicology Letters

Year:

2018

Language:

english

File:

PDF, 1.49 MB

english, 2018

22

Semantic biclustering for finding local, interpretable and predictive expression patterns

Kléma, Jiří, Malinka, František, železný, Filip

Journal:

Year:

2017

Language:

english

File:

PDF, 1.31 MB

english, 2017

23

Replication of SNP associations with keratoconus in a Czech cohort

Liskova, Petra, Dudakova, Lubica, Krepelova, Anna, Klema, Jiri, Hysi, Pirro G., Novelli, Giuseppe

Journal:

Year:

2017

Language:

english

File:

PDF, 1.00 MB

english, 2017

24

Comparative Analysis of Toxic Responses of Organic Extracts from Diesel and Selected Alternative Fuels Engine Emissions in Human Lung BEAS-2B Cells

Libalova, Helena, Rossner,, Pavel, Vrbova, Kristyna, Brzicova, Tana, Sikorova, Jitka, Vojtisek-Lom, Michal, Beranek, Vit, Klema, Jiri, Ciganek, Miroslav, Neca, Jiri, Pencikova, Katerina, Machala, Miro

Journal:

International Journal of Molecular Sciences

Year:

2016

Language:

english

File:

PDF, 2.03 MB

english, 2016

25

Early isolated v-lesion may not truly represent rejection of the kidney allograft

Wohlfahrtova, Mariana, Hruba, Petra, Klema, Jiri, Novotny, Marek, Krejcik, Zdenek, Stranecky, Viktor, Honsova, Eva, Vichova, Petra, Viklicky, Ondrej

Journal:

Clinical Science

Year:

2018

Language:

english

File:

PDF, 2.98 MB

english, 2018

26

FP696ISOLATED V-LESION EARLY AFTER KIDNEY TRANSPLANTATION MAY NOT TRULY REPRESENT A REJECTION

Wohlfahrtova, Mariana, Hruba, Petra, Novotny, Marek, Klema, Jiri, Krejcik, Zdenek, Stranecky, Viktor, Honsova, Eva, Vichova, Petra, Viklicky, Ondrej

Journal:

Nephrology Dialysis Transplantation

Year:

2018

Language:

english

File:

PDF, 635 KB

english, 2018

27

Bulky DNA adducts, microRNA profiles, and lipid biomarkers in Norwegian tunnel finishing workers occupationally exposed to diesel exhaust

Rynning, Iselin, Arlt, Volker M, Vrbova, Kristyna, Neča, Jiří, Rossner Jr, Pavel, Klema, Jiri, Ulvestad, Bente, Petersen, Elisabeth, Skare, Øivind, Haugen, Aage, Phillips, David H, Machala, Miroslav,

Journal:

Occupational and Environmental Medicine

Year:

2019

Language:

english

File:

PDF, 381 KB

english, 2019

28

2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) disrupts control of cell proliferation and apoptosis in a human model of adult liver progenitors

Svobodová, Jana, Procházková, Jiřina, Kabátková, Markéta, Krkoška, Martin, Šmerdová, Lenka, Líbalová, Helena, Topinka, Jan, Kléma, Jiří, Kozubík, Alois, Machala, Miroslav, Vondráček, Jan

Journal:

Toxicological Sciences

Year:

2019

Language:

english

File:

PDF, 2.33 MB

english, 2019

29

Isolated V-Lesion Early after Kidney Transplantation May Not Truly Represent a Rejection

Wohlfahrtova, Mariana, Hruba, Petra, Novotny, Marek, Klema, Jiri, Krejcik, Zdenek, Stranecky, Viktor, Honsova, Eva, Vichova, Petra, Viklicky, Ondrej

Journal:

Transplantation Journal

Year:

2018

File:

PDF, 839 KB

2018

30

Gene Expression and Epigenetic Changes in Mice Following Inhalation of Copper(II) Oxide Nanoparticles

Rossner, Pavel, Vrbova, Kristyna, Rossnerova, Andrea, Zavodna, Tana, Milcova, Alena, Klema, Jiri, Vecera, Zbynek, Mikuska, Pavel, Coufalik, Pavel, Capka, Lukas, Krumal, Kamil, Docekal, Bohumil, Holan,

Journal:

Year:

2020

Language:

english

File:

PDF, 1.63 MB

english, 2020

31

Molecular Fingerprints of Borderline Changes in Kidney Allografts Are Influenced by Donor Category

Hruba, Petra, Krejcik, Zdenek, Dostalova Merkerova, Michaela, Klema, Jiri, Stranecky, Viktor, Slatinska, Janka, Maluskova, Jana, Honsova, Eva, Viklicky, Ondrej

Journal:

Frontiers in Immunology

Year:

2020

File:

PDF, 1.01 MB

2020

32

TO005OPERATIONAL TOLERANCE IN KIDNEY TRANSPLANT RECIPIENTS: TOMOGRAM TRANSCRIPTOMIC STUDY

Viklicky, Ondrej, Klema, Jiri, Mrazova, Petra, Abramowicz, Daniel, Abramowicz, Marc, Massart, Annick, Hruba, Petra, Study Group, TOMOGRAM

Journal:

Nephrology Dialysis Transplantation

Year:

2020

File:

PDF, 93 KB

2020

33

The Differential Effect of Carbon Dots on Gene Expression and DNA Methylation of Human Embryonic Lung Fibroblasts as a Function of Surface Charge and Dose

Sima, Michal, Vrbova, Kristyna, Zavodna, Tana, Honkova, Katerina, Chvojkova, Irena, Ambroz, Antonin, Klema, Jiri, Rossnerova, Andrea, Polakova, Katerina, Malina, Tomas, Belza, Jan, Topinka, Jan, Rossn

Journal:

International Journal of Molecular Sciences

Year:

2020

File:

PDF, 5.07 MB

2020

34

LncRNA Profiling Reveals That the Deregulation of H19, WT1-AS, TCL6, and LEF1-AS1 Is Associated with Higher-Risk Myelodysplastic Syndrome

Szikszai, Katarina, Krejcik, Zdenek, Klema, Jiri, Loudova, Nikoleta, Hrustincova, Andrea, Belickova, Monika, Hruba, Monika, Vesela, Jitka, Stranecky, Viktor, Kundrat, David, Pecherkova, Pavla, Cermak,

Journal:

Year:

2020

File:

PDF, 3.22 MB

2020

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